Here is a list of all class members with links to the classes they belong to:
- m -
- m
: __faidx_t
, __hts_idx_t
, __kstring_t
, bins_t
, cram_fd
, hts_itr_t
- m_allele
: bcf_dec_t
- m_als
: bcf_dec_t
- m_data
: bam1_t
- m_flt
: bcf_dec_t
- m_fmt
: bcf_dec_t
- m_id
: bcf_dec_t
- m_info
: bcf_dec_t
- m_num_input_vcfs
: gamgee::utils::MergedVCFLUTBase< inputs_2_merged_LUT_is_input_ordered, merged_2_inputs_LUT_is_input_ordered >
- m_num_merged_fields
: gamgee::utils::MergedVCFLUTBase< inputs_2_merged_LUT_is_input_ordered, merged_2_inputs_LUT_is_input_ordered >
- m_variant_file_ptr
: gamgee::VariantIterator
- m_variant_header_ptr
: gamgee::VariantIterator
- m_variant_record
: gamgee::VariantIterator
- m_variant_record_ptr
: gamgee::VariantIterator
- magic
: cram_file_def
- major_version
: cram_file_def
- make_cigar_element()
: gamgee::Cigar
- mals
: _bcf_sr_regions_t
- mapped_qs_included
: cram_block_compression_hdr
- mapping_qual()
: gamgee::Sam
- mate_alignment_start()
: gamgee::Sam
- mate_alignment_stop()
: gamgee::Sam
- mate_chromosome()
: gamgee::Sam
- mate_flags
: cram_record
- mate_line
: cram_record
- mate_pos
: cram_record
- mate_ref_id
: cram_record
- mate_reverse()
: gamgee::Sam
- mate_unclipped_start()
: gamgee::Sam
- mate_unclipped_stop()
: gamgee::Sam
- mate_unmapped()
: gamgee::Sam
- max
: mempool_t
- max_apos
: cram_container
, cram_slice
- max_c_rec
: cram_container
- max_g
: fmt_aux_t
- max_l
: fmt_aux_t
- max_length
: string_alloc_t
- max_m
: fmt_aux_t
- max_rec
: cram_container
- max_response
: knetFile_s
- max_slice
: cram_container
- max_unpack
: bcf1_t
, bcf_srs_t
- max_value_length()
: gamgee::utils::ShortValueOptimizedStorage< ELEMENT_TYPE >
- max_values_per_sample()
: gamgee::VariantBuilderMultiSampleVector< ELEMENT_TYPE >
- mbuffer
: bcf_sr_t
- md5
: cram_block_slice_hdr
- median_insert_size
: gamgee::ReadGroup
- mem
: bcf_hdr_t
- merge()
: gamgee::VariantHeaderBuilder
- MergedVCFAllelesIdxLUT()
: gamgee::utils::MergedVCFAllelesIdxLUT< inputs_2_merged_LUT_is_input_ordered, merged_2_inputs_LUT_is_input_ordered >
- MergedVCFLUTBase()
: gamgee::utils::MergedVCFLUTBase< inputs_2_merged_LUT_is_input_ordered, merged_2_inputs_LUT_is_input_ordered >
- meta
: __hts_idx_t
- meta_char
: tbx_conf_t
- method
: cram_metrics
- metrics_lock
: cram_fd
- midx
: _bcf_sweep_t
- min
: __bam_mplp_t
- min_shift
: __hts_idx_t
, args_t
- minor_version
: cram_file_def
- missed_reg_data
: _bcf_sr_regions_t
- missed_reg_handler
: _bcf_sr_regions_t
- missing()
: gamgee::Genotype
, gamgee::IndividualField< TYPE >
, gamgee::IndividualFieldValue< VALUE_TYPE >
, gamgee::SamTag< TAG_TYPE >
, gamgee::SharedField< TYPE >
, gamgee::Variant
, gamgee::VariantBuilderIndividualField< ENCODED_TYPE, BULK_CHANGE_TYPE >
, gamgee::VariantFilters
- mixed()
: gamgee::Genotype
- mlals
: _bcf_sweep_t
- mode
: cram_fd
, mFILE
- modified()
: gamgee::VariantBuilderIndividualRegion
, gamgee::VariantBuilderSharedRegion
- moffs
: __bgzidx_t
- mpos
: bam1_core_t
- mqual
: cram_record
- mrec
: _bcf_sweep_t
- mregs
: _region_t
, reglist_t
- mseq
: _regidx_t
- mt
: BGZF
, worker_t
- mtid
: bam1_core_t
- multi_seq
: cram_container
, cram_fd
- MultipleVariantIterator()
: gamgee::MultipleVariantIterator
- MultipleVariantReader()
: gamgee::MultipleVariantReader< ITERATOR >