Class Index

A | B | C | F | G | H | I | K | M | P | R | S | T | V | W | Z | _

B	MergedVCFLUTBase (gamgee::utils)	VariantBuilder (gamgee)	bcf_idpair_t	hFILE_backend
	MultipleVariantIterator (gamgee)	VariantBuilderCoreField (gamgee)	bcf_info_t	hFILE_fd
BaseQuals (gamgee)	MultipleVariantReader (gamgee)	VariantBuilderIndividualField (gamgee)	bcf_sr_t	hFILE_mem
BGZF	R	VariantBuilderIndividualRegion (gamgee)	bcf_srs_t	hFILE_net
C		VariantBuilderMultiSampleVector (gamgee)	bgzf_mtaux_t	hgacc_t
	RansDecSymbol	VariantBuilderSharedRegion (gamgee)	bgzidx1_t	hts_cram_idx_t
ChromosomeNotFoundException (gamgee)	RansEncSymbol	VariantFilters (gamgee)	bins_t	hts_itr_t
ChromosomeSizeException (gamgee)	ReadBases (gamgee)	VariantFiltersIterator (gamgee)	c	hts_opt
Cigar (gamgee)	ReadGroup (gamgee)	VariantHeader (gamgee)		hts_pair64_t
F	ReferenceBlockSplittingVariantIterator (gamgee)	VariantHeaderBuilder (gamgee)	cache_t	htsFile
	ReferenceIterator (gamgee)	VariantHeaderDeleter (gamgee::utils)	cram_beta_decoder	htsFormat
Fastq (gamgee)	ReferenceMap (gamgee)	VariantHeaderMerger (gamgee)	cram_block	k
FastqIterator (gamgee)	S	VariantIterator (gamgee)	cram_block_compression_hdr
FastqReader (gamgee)		VariantReader (gamgee)	cram_block_slice_hdr	knetFile_s
FileOpenException (gamgee)	Sam (gamgee)	VariantWriter (gamgee)	cram_byte_array_len_decoder	ks_isort_stack_t
G	SAM_hdr	_	cram_byte_array_len_encoder	ks_tokaux_t
	SAM_hdr_item_s		cram_byte_array_stop_decoder	m
Genotype (gamgee)	SAM_hdr_tag_s	__bam_mplp_t	cram_codec
H	SAM_PG	__bgzidx_t	cram_container	mempool_t
	SAM_RG	__faidx_t	cram_decode_job	mFILE
HeaderCompatibilityException (gamgee)	SAM_SQ	__hts_idx_t	cram_external_decoder	p
HeaderReadException (gamgee)	SamBodyDeleter (gamgee::utils)	__kstring_t	cram_fd
HtsFileDeleter (gamgee::utils)	SamBuilder (gamgee)	__linkbuf_t	cram_feature	pmap_t
HtsIndexDeleter (gamgee::utils)	SamBuilderDataField (gamgee)	_bcf_sr_regions_t	cram_file_def	pool_alloc_t
HtsIteratorDeleter (gamgee::utils)	SamHeader (gamgee)	_bcf_sweep_t	cram_gamma_decoder	pool_t
HtslibException (gamgee)	SamHeaderDeleter (gamgee::utils)	_regidx_t	cram_huffman_code	r
I	SamIterator (gamgee)	_region_t	cram_huffman_decoder
	SamPairIterator (gamgee)	a	cram_huffman_encoder	ref_entry
IFStreamDeleter (gamgee::utils)	SamReader (gamgee)		cram_index	refs_t
IndexedSamIterator (gamgee)	SamTag (gamgee)	args_t	cram_job	reg_t
IndexedSamReader (gamgee)	SamWriter (gamgee)	ari_decoder	cram_map	region1_t
IndexedVariantIterator (gamgee)	SharedBufferSpan (gamgee)	b	cram_metrics	regitr_t
IndexedVariantReader (gamgee)	SharedField (gamgee)		cram_range	reglist_t
IndexLoadException (gamgee)	SharedFieldIterator (gamgee)	bam1_core_t	cram_record	s
IndividualField (gamgee)	ShortValueOptimizedStorage (gamgee::utils)	bam1_t	cram_slice
IndividualFieldIterator (gamgee)	SingleInputException (gamgee)	bam_hdr_t	cram_stats	spare_bams
IndividualFieldValue (gamgee)	SyncedReaderDeleter (gamgee::utils)	bam_pileup1_t	cram_subexp_decoder	string_alloc_t
IndividualFieldValueIterator (gamgee)	SyncedVariantIterator (gamgee)	bcf1_t	cstate_t	string_t
Interval (gamgee)	SyncedVariantReader (gamgee)	bcf_dec_t	f	t
M	V	bcf_fmt_t
		bcf_hdr_t	faidx1_t	t_pool
MD5_CTX	Variant (gamgee)	bcf_hrec_t	fmt_aux_t	t_pool_job
MergedVCFAllelesIdxLUT (gamgee::utils)	VariantBodyDeleter (gamgee::utils)	bcf_idinfo_t	h	t_pool_worker_t
			hFILE

A | B | C | F | G | H | I | K | M | P | R | S | T | V | W | Z | _