|
Gamgee
You miserable little maggot. I'll stove your head in!
|
All Classes Namespaces Files Functions Variables Typedefs Enumerations Enumerator Friends Macros Pages
|
Gamgee
You miserable little maggot. I'll stove your head in!
|
#include <cram_structs.h>
Public Member Functions | |
| khash_t (m_s2i)*TD_hash | |
| khash_t (map)*preservation_map | |
Public Attributes | |
| int32_t | ref_seq_id |
| int32_t | ref_seq_start |
| int32_t | ref_seq_span |
| int32_t | num_records |
| int32_t | num_landmarks |
| int32_t * | landmark |
| int | mapped_qs_included |
| int | unmapped_qs_included |
| int | unmapped_placed |
| int | qs_included |
| int | read_names_included |
| int | AP_delta |
| char | substitution_matrix [5][4] |
| cram_block * | TD_blk |
| int | nTL |
| unsigned char ** | TL |
| string_alloc_t * | TD_keys |
| struct cram_map * | rec_encoding_map [CRAM_MAP_HASH] |
| struct cram_map * | tag_encoding_map [CRAM_MAP_HASH] |
| struct cram_codec * | codecs [DS_END] |
| char * | uncomp |
| size_t | uncomp_size |
| size_t | uncomp_alloc |
| unsigned int | data_series |
| cram_block_compression_hdr::khash_t | ( | m_s2i | ) |
| cram_block_compression_hdr::khash_t | ( | map | ) |
| int cram_block_compression_hdr::AP_delta |
| struct cram_codec* cram_block_compression_hdr::codecs[DS_END] |
| unsigned int cram_block_compression_hdr::data_series |
| int32_t* cram_block_compression_hdr::landmark |
| int cram_block_compression_hdr::mapped_qs_included |
| int cram_block_compression_hdr::nTL |
| int32_t cram_block_compression_hdr::num_landmarks |
| int32_t cram_block_compression_hdr::num_records |
| int cram_block_compression_hdr::qs_included |
| int cram_block_compression_hdr::read_names_included |
| struct cram_map* cram_block_compression_hdr::rec_encoding_map[CRAM_MAP_HASH] |
| int32_t cram_block_compression_hdr::ref_seq_id |
| int32_t cram_block_compression_hdr::ref_seq_span |
| int32_t cram_block_compression_hdr::ref_seq_start |
| char cram_block_compression_hdr::substitution_matrix[5][4] |
| struct cram_map* cram_block_compression_hdr::tag_encoding_map[CRAM_MAP_HASH] |
| cram_block* cram_block_compression_hdr::TD_blk |
| string_alloc_t* cram_block_compression_hdr::TD_keys |
| unsigned char** cram_block_compression_hdr::TL |
| char* cram_block_compression_hdr::uncomp |
| size_t cram_block_compression_hdr::uncomp_alloc |
| size_t cram_block_compression_hdr::uncomp_size |
| int cram_block_compression_hdr::unmapped_placed |
| int cram_block_compression_hdr::unmapped_qs_included |
1.8.8