cram_record Struct Reference

#include <cram_structs.h>

Public Attributes
struct cram_slice *	s
int32_t	ref_id
int32_t	flags
int32_t	cram_flags
int32_t	len
int32_t	apos
int32_t	rg
int32_t	name
int32_t	name_len
int32_t	mate_line
int32_t	mate_ref_id
int32_t	mate_pos
int32_t	tlen
int32_t	ntags
int32_t	aux
int32_t	aux_size
int32_t	TN_idx
int	TL
int32_t	seq
int32_t	qual
int32_t	cigar
int32_t	ncigar
int32_t	aend
int32_t	mqual
int32_t	feature
int32_t	nfeature
int32_t	mate_flags

Member Data Documentation

int32_t cram_record::aend

int32_t cram_record::apos

int32_t cram_record::aux

int32_t cram_record::aux_size

int32_t cram_record::cigar

int32_t cram_record::cram_flags

int32_t cram_record::feature

int32_t cram_record::flags

int32_t cram_record::len

int32_t cram_record::mate_flags

int32_t cram_record::mate_line

int32_t cram_record::mate_pos

int32_t cram_record::mate_ref_id

int32_t cram_record::mqual

int32_t cram_record::name

int32_t cram_record::name_len

int32_t cram_record::ncigar

int32_t cram_record::nfeature

int32_t cram_record::ntags

int32_t cram_record::qual

int32_t cram_record::ref_id

int32_t cram_record::rg

struct cram_slice* cram_record::s

int32_t cram_record::seq

int cram_record::TL

int32_t cram_record::tlen

int32_t cram_record::TN_idx

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The documentation for this struct was generated from the following file:

• build/contrib/htslib/src/htslib/cram/cram_structs.h