Here is a list of all class members with links to the classes they belong to:

- c -

• C : ari_decoder
• c : cram_decode_job , cram_job , MD5_CTX
• cache : BGZF
• cache_size : BGZF
• caddr : bgzidx1_t
• capacity() : gamgee::utils::ShortValueOptimizedStorage< ELEMENT_TYPE >
• category : htsFormat
• center : gamgee::ReadGroup
• char_tag() : gamgee::Sam
• chop() : gamgee::Fastq
• chr() : gamgee::Interval
• chromosome() : gamgee::Sam , gamgee::Variant
• chromosome_name() : gamgee::Variant
• ChromosomeNotFoundException() : gamgee::ChromosomeNotFoundException
• chromosomes() : gamgee::VariantHeader
• ChromosomeSizeException() : gamgee::ChromosomeSizeException
• cigar : cram_record , cram_slice
• Cigar() : gamgee::Cigar
• cigar() : gamgee::Sam
• cigar_alloc : cram_slice
• cigar_op() : gamgee::Cigar
• cigar_op_parse_table : gamgee::Cigar
• cigar_oplen() : gamgee::Cigar
• cigar_tab : bam_hdr_t
• clear() : gamgee::utils::MergedVCFLUTBase< inputs_2_merged_LUT_is_input_ordered, merged_2_inputs_LUT_is_input_ordered > , gamgee::utils::ShortValueOptimizedStorage< ELEMENT_TYPE > , gamgee::VariantBuilder , gamgee::VariantBuilderCoreField< FIELD_TYPE > , gamgee::VariantBuilderIndividualField< ENCODED_TYPE, BULK_CHANGE_TYPE > , gamgee::VariantBuilderIndividualRegion , gamgee::VariantBuilderSharedRegion , gamgee::VariantHeaderMerger< fields_forward_LUT_ordering, fields_reverse_LUT_ordering, samples_forward_LUT_ordering, samples_reverse_LUT_ordering >
• close : hFILE_backend
• cmpl_freq : RansEncSymbol
• cnt : mempool_t
• code : cram_feature , cram_huffman_code
• codec : cram_codec , cram_map
• codecs : cram_block_compression_hdr
• codes : cram_huffman_decoder , cram_huffman_encoder
• collapse : bcf_srs_t
• combined_header() : gamgee::MultipleVariantReader< ITERATOR >
• comment() : gamgee::Fastq
• comp_hdr : cram_container
• comp_hdr_block : cram_container
• comp_size : cram_block
• complex() : gamgee::Genotype
• compress_level : BGZF , worker_t
• compressed_block : BGZF
• compression : htsFormat
• conf : tbx_t
• consumes_read_bases() : gamgee::Cigar
• consumes_reference_bases() : gamgee::Cigar
• content_id : cram_block , cram_byte_array_stop_decoder , cram_external_decoder
• content_type : cram_block , cram_block_slice_hdr
• copy_into() : gamgee::SamBuilderDataField
• core : bam1_t
• count : ref_entry , refs_t
• cram : hts_cram_idx_t , htsFile
• cram_flag_swap : cram_fd
• cram_flags : cram_record
• cram_sub_matrix : cram_fd
• crc32 : cram_block , cram_container
• crecs : cram_slice
• creg : _region_t
• ctr : cram_fd
• ctrl_fd : knetFile_s
• curr : bgzf_mtaux_t
• curr_c_rec : cram_container
• curr_off : hts_itr_t
• curr_rec : cram_container
• curr_ref : cram_container
• curr_serial : t_results_queue
• curr_slice : cram_container
• current_interval() : gamgee::IndexedSamIterator
• cv : bgzf_mtaux_t