Here is a list of all class members with links to the classes they belong to:

- r -

• R : ari_decoder
• range : cram_fd
• rans0_cnt : cram_metrics
• rans0_extra : cram_metrics
• rans1_cnt : cram_metrics
• rans1_extra : cram_metrics
• raw_data_ptr() : gamgee::SamBuilderDataField
• rcp_freq : RansEncSymbol
• rcp_shift : RansEncSymbol
• read : hFILE_backend
• read_and_cache_current_pointee() : gamgee::IndividualFieldValueIterator< VALUE_TYPE > , gamgee::SharedFieldIterator< VALUE_TYPE >
• read_groups() : gamgee::SamHeader
• read_names_included : cram_block_compression_hdr
• read_rest : hts_itr_t
• ReadBases() : gamgee::ReadBases
• readers : bcf_srs_t
• ReadGroup() : gamgee::ReadGroup
• readrec : hts_itr_t
• rec : _bcf_sweep_t
• rec_encoding_map : cram_block_compression_hdr
• record_counter : cram_block_slice_hdr , cram_container , cram_fd
• ref : cram_container , cram_fd , cram_slice , gamgee::Variant , SAM_hdr
• ref_allele_length() : gamgee::VariantBuilderSharedRegion
• ref_base() : gamgee::ReferenceIterator
• ref_base_id : cram_block_slice_hdr
• ref_end : cram_container , cram_fd , cram_slice
• ref_fn : cram_fd
• ref_free : cram_fd
• ref_id : cram_container , cram_fd , cram_record , cram_slice , refs_t
• ref_lock : cram_fd
• ref_seq_id : cram_block_compression_hdr , cram_block_slice_hdr , cram_container
• ref_seq_span : cram_block_compression_hdr , cram_block_slice_hdr , cram_container
• ref_seq_start : cram_block_compression_hdr , cram_block_slice_hdr , cram_container
• ref_start : cram_container , cram_fd , cram_slice
• ReferenceBlockSplittingVariantIterator() : gamgee::ReferenceBlockSplittingVariantIterator , gamgee::Variant
• ReferenceIterator() : gamgee::ReferenceIterator
• ReferenceMap() : gamgee::ReferenceMap
• refid : cram_index , cram_range
• refs : cram_fd
• refs_used : cram_container
• reg : regitr_t
• regions : bcf_srs_t
• regs : _bcf_sr_regions_t , _region_t , reglist_t
• remove() : gamgee::VariantBuilderIndividualField< ENCODED_TYPE, BULK_CHANGE_TYPE >
• remove_alignment_stop() : gamgee::VariantBuilder
• remove_alt_alleles() : gamgee::VariantBuilder , gamgee::VariantBuilderSharedRegion
• remove_filters() : gamgee::VariantBuilder , gamgee::VariantBuilderSharedRegion
• remove_id() : gamgee::VariantBuilder , gamgee::VariantBuilderSharedRegion
• remove_individual_field() : gamgee::VariantBuilder , gamgee::VariantBuilderIndividualRegion
• remove_individual_fields() : gamgee::VariantBuilder
• remove_info_field() : gamgee::VariantBuilderSharedRegion
• remove_qual() : gamgee::VariantBuilder
• remove_shared_field() : gamgee::VariantBuilder
• remove_shared_fields() : gamgee::VariantBuilder
• removed() : gamgee::VariantBuilderIndividualField< ENCODED_TYPE, BULK_CHANGE_TYPE >
• require_index : bcf_srs_t
• required_fields : cram_fd
• reset() : gamgee::VariantHeaderMerger< fields_forward_LUT_ordering, fields_reverse_LUT_ordering, samples_forward_LUT_ordering, samples_reverse_LUT_ordering >
• reset_input_idx_for_merged() : gamgee::utils::MergedVCFLUTBase< inputs_2_merged_LUT_is_input_ordered, merged_2_inputs_LUT_is_input_ordered >
• reset_luts() : gamgee::utils::MergedVCFLUTBase< inputs_2_merged_LUT_is_input_ordered, merged_2_inputs_LUT_is_input_ordered >
• reset_merged_idx_for_input() : gamgee::utils::MergedVCFLUTBase< inputs_2_merged_LUT_is_input_ordered, merged_2_inputs_LUT_is_input_ordered >
• resize_inputs_2_merged_lut_if_needed() : gamgee::utils::MergedVCFLUTBase< inputs_2_merged_LUT_is_input_ordered, merged_2_inputs_LUT_is_input_ordered >
• resize_luts_if_needed() : gamgee::utils::MergedVCFAllelesIdxLUT< inputs_2_merged_LUT_is_input_ordered, merged_2_inputs_LUT_is_input_ordered > , gamgee::utils::MergedVCFLUTBase< inputs_2_merged_LUT_is_input_ordered, merged_2_inputs_LUT_is_input_ordered >
• resize_merged_2_inputs_lut_if_needed() : gamgee::utils::MergedVCFLUTBase< inputs_2_merged_LUT_is_input_ordered, merged_2_inputs_LUT_is_input_ordered >
• response : knetFile_s
• result_avail_c : t_results_queue
• result_head : t_results_queue
• result_m : t_results_queue
• result_tail : t_results_queue
• retr : knetFile_s
• reverse() : gamgee::Sam
• reverse_complement() : gamgee::Fastq
• revised_method : cram_metrics
• rg : cram_record , SAM_hdr
• rid : bcf1_t
• rid_prev : _regidx_t
• right : ks_isort_stack_t
• rlen : bcf1_t
• rqueue : cram_fd