Here is a list of all class members with links to the classes they belong to:
- b -
- b
: __linkbuf_t
, bam_pileup1_t
- B
: cram_feature
- b
: cram_feature
, MD5_CTX
- back()
: gamgee::IndividualField< TYPE >
, gamgee::IndividualFieldValue< VALUE_TYPE >
, gamgee::SharedField< TYPE >
- backend
: hFILE
- bam_flag_swap
: cram_fd
- bam_list_lock
: cram_fd
- bams
: cram_container
, spare_bams
- base
: cram_feature
, hFILE_fd
, hFILE_mem
, hFILE_net
- base_blk
: cram_slice
- base_quals()
: gamgee::Sam
- BaseQuals()
: gamgee::BaseQuals
- bases()
: gamgee::Sam
- bases_per_line
: ref_entry
- bc
: tbx_conf_t
- bcf_idx
: bcf_sr_t
- beg
: __linkbuf_t
, hts_itr_t
, tbx_intv_t
- begin()
: gamgee::FastqReader
, gamgee::IndexedSamReader< ITERATOR >
, gamgee::IndexedVariantReader< ITERATOR >
, gamgee::IndividualField< TYPE >
, gamgee::IndividualFieldValue< VALUE_TYPE >
, gamgee::MultipleVariantReader< ITERATOR >
, gamgee::SamReader< ITERATOR >
, gamgee::SharedField< TYPE >
, gamgee::SyncedVariantReader< ITERATOR >
, gamgee::VariantFilters
, gamgee::VariantReader< ITERATOR >
, hFILE
- beta
: cram_codec
- bgzf
: __faidx_t
, htsFile
- biallelic()
: gamgee::Genotype
- bias
: RansEncSymbol
- bidx
: __hts_idx_t
- bin
: bam1_core_t
- bins
: hts_itr_t
- bit
: cram_block
- bl
: cram_fd
- blk
: bgzf_mtaux_t
- block
: cache_t
, cram_slice
, MD5_CTX
- block_address
: BGZF
- block_by_id
: cram_slice
- block_content_ids
: cram_block_slice_hdr
- block_length
: BGZF
- block_offset
: BGZF
- block_size
: _bcf_sweep_t
- boolean_shared_field()
: gamgee::Variant
- buf
: fmt_aux_t
, mempool_t
, worker_t
- buffer
: bcf_sr_t
, hFILE
, hFILE_mem
, MD5_CTX
- build()
: gamgee::SamBuilder
, gamgee::VariantBuilder
, gamgee::VariantHeaderBuilder
- bulk_set_float_field()
: gamgee::VariantBuilderIndividualRegion
- bulk_set_genotype_field()
: gamgee::VariantBuilderIndividualRegion
- bulk_set_integer_field()
: gamgee::VariantBuilderIndividualRegion
- bulk_set_string_field()
: gamgee::VariantBuilderIndividualRegion
- byte
: cram_block
- byte_array_len
: cram_codec
- byte_array_stop
: cram_codec
- bzip2_cnt
: cram_metrics
- bzip2_extra
: cram_metrics