- s -

s : __kstring_t , __linkbuf_t , cram_decode_job
S : cram_feature
s : cram_record , hts_opt
sample : gamgee::ReadGroup
samples : bcf_hdr_t , bcf_sr_t , bcf_srs_t
save_bin : __hts_idx_t
save_off : __hts_idx_t
save_tid : __hts_idx_t
sc : tbx_conf_t
sdict : bam_hdr_t
se : tbx_intv_t
seek : hFILE_backend
seek_offset : knetFile_s
sep : ks_tokaux_t
seq : _regidx_t , cram_record , ref_entry
seq2regs : _regidx_t
seq_hash : _bcf_sr_regions_t
seq_idx : cram_feature
seq_names : _bcf_sr_regions_t , _regidx_t
seqs_blk : cram_slice
seqs_per_slice : cram_fd
serial : t_pool_job , t_res
shared : bcf1_t
shared_dirty : bcf_dec_t
shared_ref : cram_fd
shutdown : t_pool
size : bcf_fmt_t , cache_t , cram_map , fmt_aux_t , mFILE
size_cmd : knetFile_s
slice : cram_container , cram_index
slice_num : cram_fd
slice_rec : cram_container
slices : cram_container
slices_per_container : cram_fd
soft_blk : cram_slice
ss : tbx_intv_t
start : _bcf_sr_regions_t , cram_index , cram_range , RansDecSymbol , reg_t , region1_t
start_offset : gamgee::SharedBufferSpan
start_prev : _regidx_t
stats : cram_container
stop : cram_byte_array_stop_decoder
store : cram_codec
str : _regidx_t , SAM_hdr_tag_s , string_t
str_pool : SAM_hdr
strat : cram_metrics
streaming : bcf_srs_t
strings : string_alloc_t
subexp : cram_codec
substitution_matrix : cram_block_compression_hdr
symbol : cram_huffman_code
sz_bzip2 : cram_metrics
sz_gz_def : cram_metrics
sz_gz_rle : cram_metrics
sz_lzma : cram_metrics
sz_rans0 : cram_metrics
sz_rans1 : cram_metrics