- o -

• one_time_build() : gamgee::SamBuilder , gamgee::VariantHeaderBuilder
• operator!=() : gamgee::BaseQuals , gamgee::Cigar , gamgee::Fastq , gamgee::FastqIterator , gamgee::Genotype , gamgee::IndexedSamIterator , gamgee::IndexedVariantIterator , gamgee::IndividualField< TYPE > , gamgee::IndividualFieldIterator< TYPE > , gamgee::IndividualFieldValue< VALUE_TYPE > , gamgee::IndividualFieldValueIterator< VALUE_TYPE > , gamgee::Interval , gamgee::MultipleVariantIterator , gamgee::ReadBases , gamgee::ReferenceBlockSplittingVariantIterator , gamgee::SamIterator , gamgee::SamPairIterator , gamgee::SharedField< TYPE > , gamgee::SharedFieldIterator< VALUE_TYPE > , gamgee::SyncedVariantIterator , gamgee::VariantFiltersIterator , gamgee::VariantHeader , gamgee::VariantIterator
• operator()() : gamgee::utils::HtsFileDeleter , gamgee::utils::HtsIndexDeleter , gamgee::utils::HtsIteratorDeleter , gamgee::utils::IFStreamDeleter , gamgee::utils::SamBodyDeleter , gamgee::utils::SamHeaderDeleter , gamgee::utils::SyncedReaderDeleter , gamgee::utils::VariantBodyDeleter , gamgee::utils::VariantHeaderDeleter
• operator*() : gamgee::FastqIterator , gamgee::IndexedSamIterator , gamgee::IndividualFieldIterator< TYPE > , gamgee::IndividualFieldValueIterator< VALUE_TYPE > , gamgee::MultipleVariantIterator , gamgee::ReferenceBlockSplittingVariantIterator , gamgee::SamIterator , gamgee::SamPairIterator , gamgee::SharedFieldIterator< VALUE_TYPE > , gamgee::SyncedVariantIterator , gamgee::VariantFiltersIterator , gamgee::VariantIterator
• operator++() : gamgee::FastqIterator , gamgee::IndexedSamIterator , gamgee::IndividualFieldIterator< TYPE > , gamgee::IndividualFieldValueIterator< VALUE_TYPE > , gamgee::MultipleVariantIterator , gamgee::ReferenceBlockSplittingVariantIterator , gamgee::SamIterator , gamgee::SamPairIterator , gamgee::SharedFieldIterator< VALUE_TYPE > , gamgee::SyncedVariantIterator , gamgee::VariantFiltersIterator , gamgee::VariantIterator
• operator+=() : gamgee::IndividualFieldIterator< TYPE > , gamgee::IndividualFieldValueIterator< VALUE_TYPE > , gamgee::SharedFieldIterator< VALUE_TYPE > , gamgee::VariantFiltersIterator
• operator-() : gamgee::IndividualFieldIterator< TYPE > , gamgee::SharedFieldIterator< VALUE_TYPE >
• operator--() : gamgee::IndividualFieldIterator< TYPE > , gamgee::IndividualFieldValueIterator< VALUE_TYPE > , gamgee::SharedFieldIterator< VALUE_TYPE > , gamgee::VariantFiltersIterator
• operator-=() : gamgee::IndividualFieldIterator< TYPE > , gamgee::IndividualFieldValueIterator< VALUE_TYPE > , gamgee::SharedFieldIterator< VALUE_TYPE > , gamgee::VariantFiltersIterator
• operator<() : gamgee::IndividualFieldIterator< TYPE > , gamgee::IndividualFieldValueIterator< VALUE_TYPE > , gamgee::SharedFieldIterator< VALUE_TYPE > , gamgee::VariantFiltersIterator
• operator<=() : gamgee::IndividualFieldIterator< TYPE > , gamgee::IndividualFieldValueIterator< VALUE_TYPE > , gamgee::SharedFieldIterator< VALUE_TYPE > , gamgee::VariantFiltersIterator
• operator=() : gamgee::BaseQuals , gamgee::Cigar , gamgee::Fastq , gamgee::FastqIterator , gamgee::FastqReader , gamgee::Genotype , gamgee::IndexedSamIterator , gamgee::IndexedSamReader< ITERATOR > , gamgee::IndexedVariantIterator , gamgee::IndexedVariantReader< ITERATOR > , gamgee::IndividualField< TYPE > , gamgee::IndividualFieldIterator< TYPE > , gamgee::IndividualFieldValue< VALUE_TYPE > , gamgee::IndividualFieldValueIterator< VALUE_TYPE > , gamgee::Interval , gamgee::MultipleVariantIterator , gamgee::MultipleVariantReader< ITERATOR > , gamgee::ReadBases , gamgee::ReferenceBlockSplittingVariantIterator , gamgee::Sam , gamgee::SamBuilder , gamgee::SamBuilderDataField , gamgee::SamHeader , gamgee::SamIterator , gamgee::SamPairIterator , gamgee::SamReader< ITERATOR > , gamgee::SamTag< TAG_TYPE > , gamgee::SamWriter , gamgee::SharedField< TYPE > , gamgee::SharedFieldIterator< VALUE_TYPE > , gamgee::SyncedVariantIterator , gamgee::SyncedVariantReader< ITERATOR > , gamgee::utils::ShortValueOptimizedStorage< ELEMENT_TYPE > , gamgee::Variant , gamgee::VariantBuilder , gamgee::VariantBuilderIndividualField< ENCODED_TYPE, BULK_CHANGE_TYPE > , gamgee::VariantBuilderIndividualRegion , gamgee::VariantBuilderMultiSampleVector< ELEMENT_TYPE > , gamgee::VariantBuilderSharedRegion , gamgee::VariantHeader , gamgee::VariantHeaderBuilder , gamgee::VariantHeaderMerger< fields_forward_LUT_ordering, fields_reverse_LUT_ordering, samples_forward_LUT_ordering, samples_reverse_LUT_ordering > , gamgee::VariantIterator , gamgee::VariantReader< ITERATOR > , gamgee::VariantWriter
• operator==() : gamgee::BaseQuals , gamgee::Cigar , gamgee::Fastq , gamgee::FastqIterator , gamgee::Genotype , gamgee::IndividualField< TYPE > , gamgee::IndividualFieldIterator< TYPE > , gamgee::IndividualFieldValue< VALUE_TYPE > , gamgee::IndividualFieldValueIterator< VALUE_TYPE > , gamgee::Interval , gamgee::ReadBases , gamgee::SharedField< TYPE > , gamgee::SharedFieldIterator< VALUE_TYPE > , gamgee::VariantFiltersIterator , gamgee::VariantHeader
• operator>() : gamgee::IndividualFieldIterator< TYPE > , gamgee::IndividualFieldValueIterator< VALUE_TYPE > , gamgee::SharedFieldIterator< VALUE_TYPE > , gamgee::VariantFiltersIterator
• operator>=() : gamgee::IndividualFieldIterator< TYPE > , gamgee::IndividualFieldValueIterator< VALUE_TYPE > , gamgee::SharedFieldIterator< VALUE_TYPE > , gamgee::VariantFiltersIterator
• operator[]() : gamgee::BaseQuals , gamgee::Cigar , gamgee::Genotype , gamgee::IndividualField< TYPE > , gamgee::IndividualFieldIterator< TYPE > , gamgee::IndividualFieldValue< VALUE_TYPE > , gamgee::IndividualFieldValueIterator< VALUE_TYPE > , gamgee::ReadBases , gamgee::SharedField< TYPE > , gamgee::SharedFieldIterator< VALUE_TYPE > , gamgee::VariantFilters , gamgee::VariantFiltersIterator
• output_type() : gamgee::Interval