Broad-Allen Developing Mouse Brain E15.5: 3D

Celldega CellCloud of a whole E15.5 mouse embryo brain: 3.8 million cells from 43 coronal Xenium sections (480-gene panel), aligned in 3D in two steps (Leiden cluster centroids, then neighborhood overlap) and colored by Leiden cluster. Drag to orbit around the brain and scroll to zoom. Data generated in collaboration with the Allen Institute. See the Align and Viz tutorials, and the celldega_xenium_E15.5_cell_cloud DegaFiles repository.