Welcome to Celldega's Documentation

Celldega Landscape visualization of a human skin cancer Xenium dataset obtained from 10X Genomics.

Celldega is a spatial analysis and visualization library that is being developed by the Spatial Technology Platform at the Broad Institute of MIT and Harvard. This project enables researchers to easily visualize large ST datasets (e.g., datasets with >100M transcripts) alongside single-cell and spatial analysis notebook workflows (e.g., sverse tools and novel spatial analysis approaches).

• Getting Started
• Installation
• GitHub Repository

What's New

Our new preprint, Celldega: Integrated Toolkit for Visualization and Analysis of Spatial Data, is now available on bioRxiv.

Intro Video

About

Celldega is named after a bodega, a small shop with all the essentials that is part of the fabric of a neighborhood.

Celldega is open source and available on GitHub.