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Visualization

Visualize SVs with IGV screenshots and read depth plots.

Visualization methods include:

  • RD Visualization - generate RD plots across all samples, ideal for visualizing large CNVs.
  • IGV Visualization - generate IGV plots of each SV for individual sample, ideal for visualizing de novo small SVs.
  • Module09.visualize.wdl - generate RD plots and IGV plots, and combine them for easy review.