AnnotateVCF

Add annotations, such as the inferred function and allele frequencies of variants, to final VCF.

Annotations methods include:

• Functional annotation - annotate SVs with inferred functional consequence on protein-coding regions, regulatory regions such as UTR and promoters, and other non-coding elements.

• Allele Frequency annotation - annotate SVs with their allele frequencies across all samples, and samples of specific sex, as well as specific sub-populations.

• Allele Frequency annotation with external callset - annotate SVs with the allele frequencies of their overlapping SVs in another callset, eg. gnomad SV callset.