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GenerateBatchMetrics

Generates variant metrics for filtering.

Prerequisites​

  • Cluster batch

Inputs​

  • Combined read count matrix, SR, PE, and BAF files (GatherBatchEvidence)
  • Per-sample median coverage estimates (GatherBatchEvidence)
  • Clustered SV VCFs (ClusterBatch)
  • Clustered depth-only call VCF (ClusterBatch)

Outputs​

  • Metrics file