Ctrl+K

Labs and Exercises

Day 1, Exercise 1: Introduction to Fiji
Day 1, Exercise 2: developing image processing intuitions
Day 1, Exercise 3: Making Manual Annotations with Piximi
Day 2, Exercise 1: Introduction to CellProfiler
Day 2, Exercise 2: Advanced Segmentation and Organelle Analysis
Day 2, Exercise 3: Classification with CellProfiler Analyst
Day 3, Exercise 1: Practical introduction to ilastik
Day 3, Exercise 2: Practical introduction to QuPath
Day 4, Exercise 1 - Interfacing CellProfiler with other software tools via files and plugins
Day 4, Exercise 2 - ‘Segment Anything’ Model (SAM) for Microscopy
Day 5, Exercise 1 - Segmenting Data with Cellpose

Additional Resources

Index

S

By Broad Institute Imaging Platform