Uses of Package
picard.util

Packages that use picard.util

Package	Description
picard.illumina
picard.util
picard.vcf

Classes in picard.util used by picard.illumina

Class and Description
IlluminaUtil.IlluminaAdapterPair Describes adapters used on each pair of strands

Classes in picard.util used by picard.util

Class and Description
AbstractInputParser Class for parsing text files where each line consists of fields separated by whitespace.
AdapterMarker Store one or more AdapterPairs to use to mark adapter sequence of SAMRecords.
AdapterPair
AtomicIterator Describes
BaitDesigner.DesignStrategy Set of possible design strategies for bait design.
BasicInputParser TextFileParser which reads a single text file.
DbSnpBitSetUtil Utility class to use with DbSnp files to determine is a locus is a dbSnp site.
DbSnpBitSetUtil.DbSnpBitSets Little tuple class to contain one bitset for SNPs and another for Indels.
DelimitedTextFileWithHeaderIterator.Row
IlluminaUtil.IlluminaAdapterPair Describes adapters used on each pair of strands
IntervalListScatterer.Mode
IntervalListTools.Action
MathUtil.LogMath A collection of common math operations that work with log values.
QuerySortedReadPairIteratorUtil.ReadPair
TabbedInputParser Parser for tab-delimited files
TabbedTextFileWithHeaderParser.Row
TestNGUtil.TestNGParameterizable Interface for exposing an implementation for converting an object into a Object[] appropriate for positional parameter-passing as performed by TestNG.
VariantType Enum to hold the possible types of dbSnps.

Classes in picard.util used by picard.vcf

Class and Description
DbSnpBitSetUtil.DbSnpBitSets Little tuple class to contain one bitset for SNPs and another for Indels.