Uses of Class
picard.util.AdapterMarker

Packages that use AdapterMarker

Package	Description
picard.util

Uses of AdapterMarker in picard.util

Methods in picard.util that return AdapterMarker

Modifier and Type	Method and Description
AdapterMarker	AdapterMarker.setMaxPairErrorRate(double maxPairErrorRate)
AdapterMarker	AdapterMarker.setMaxSingleEndErrorRate(double maxSingleEndErrorRate)
AdapterMarker	AdapterMarker.setMinPairMatchBases(int minPairMatchBases)
AdapterMarker	AdapterMarker.setMinSingleEndMatchBases(int minSingleEndMatchBases)
AdapterMarker	AdapterMarker.setNumAdaptersToKeep(int numAdaptersToKeep) After seeing the thresholdForSelectingAdapters number of adapters, keep up to this many of the original adapters.
AdapterMarker	AdapterMarker.setThresholdForSelectingAdaptersToKeep(int thresholdForSelectingAdaptersToKeep) When this number of adapters have been matched, discard the least-frequently matching ones.