Uses of Class
picard.util.DbSnpBitSetUtil.DbSnpBitSets

Packages that use DbSnpBitSetUtil.DbSnpBitSets

Package	Description
picard.util
picard.vcf

Uses of DbSnpBitSetUtil.DbSnpBitSets in picard.util

Methods in picard.util that return DbSnpBitSetUtil.DbSnpBitSets

Modifier and Type	Method and Description
static DbSnpBitSetUtil.DbSnpBitSets	DbSnpBitSetUtil.createSnpAndIndelBitSets(java.io.File dbSnpFile, htsjdk.samtools.SAMSequenceDictionary sequenceDictionary) Factory method to create both a SNP bitmask and an indel bitmask in a single pass of the VCF.
static DbSnpBitSetUtil.DbSnpBitSets	DbSnpBitSetUtil.createSnpAndIndelBitSets(java.io.File dbSnpFile, htsjdk.samtools.SAMSequenceDictionary sequenceDictionary, htsjdk.samtools.util.IntervalList intervals) Factory method to create both a SNP bitmask and an indel bitmask in a single pass of the VCF.

Uses of DbSnpBitSetUtil.DbSnpBitSets in picard.vcf

Constructors in picard.vcf with parameters of type DbSnpBitSetUtil.DbSnpBitSets

Constructor and Description
CallingMetricAccumulator(DbSnpBitSetUtil.DbSnpBitSets dbsnp)
GvcfMetricAccumulator(DbSnpBitSetUtil.DbSnpBitSets dbsnp)