Package | Description |
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picard.illumina | |
picard.util |
Modifier and Type | Field and Description |
---|---|
java.util.List<IlluminaUtil.IlluminaAdapterPair> |
MarkIlluminaAdapters.ADAPTERS |
java.util.List<IlluminaUtil.IlluminaAdapterPair> |
IlluminaBasecallsToFastq.ADAPTERS_TO_CHECK |
java.util.List<IlluminaUtil.IlluminaAdapterPair> |
IlluminaBasecallsToSam.ADAPTERS_TO_CHECK |
Constructor and Description |
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ClusterDataToSamConverter(java.lang.String runBarcode,
java.lang.String readGroupId,
ReadStructure readStructure,
java.util.List<IlluminaUtil.IlluminaAdapterPair> adapters)
Constructor
|
Modifier and Type | Method and Description |
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static IlluminaUtil.IlluminaAdapterPair |
IlluminaUtil.IlluminaAdapterPair.valueOf(java.lang.String name)
Returns the enum constant of this type with the specified name.
|
static IlluminaUtil.IlluminaAdapterPair[] |
IlluminaUtil.IlluminaAdapterPair.values()
Returns an array containing the constants of this enum type, in
the order they are declared.
|