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Overview

Celldega is a spatial analysis and visualization library developed by the Spatial Technology Platform at the Broad Institute of MIT and Harvard. It enables researchers to easily visualize and analyze large spatial transcriptomics (ST) datasets (e.g., datasets with >100M transcripts) alongside single-cell and spatial analysis notebook workflows, using interactive Jupyter Widgets that work with Xenium, MERSCOPE, Visium HD, CosMx, and Chromium data.

Source code is on GitHub.

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