Expand description
Crate for building and manipulating a series-parallel graph representation of long-read data and a linked de Bruijn graph representation of short-read data.
Modules§
- agg
- edges
- env
- ldbg
- link
- mldbg
- parse
- record
- stage
- storage_
gcs - storage_
local - utils
- wmec
- This module implements the
WhatsHapphasing algorithm as described in: Murray Patterson, Tobias Marschall, Nadia Pisanti, Leo van Iersel, Leen Stougie, et al.WhatsHap: Weighted Haplotype Assembly for Future-Generation Sequencing Reads. Journal of Computational Biology, 2015, 22 (6), pp.498-509. DOI: 10.1089/cmb.2014.0157 HAL ID: hal-01225988