List of all items

Structs

• agg::FindAllPathBetweenAnchors
• agg::GraphicalGenome
• edges::Edges
• ldbg::LdBG
• link::Link
• mldbg::MLdBG
• record::Record
• wmec::WMECData

Macros

• elog

Functions

• agg::add_unique
• agg::reconstruct_path_seq
• agg::reverse_complement
• env::gcs_authorize_data_access
• env::gcs_gcloud_is_installed
• env::local_guess_curl_ca_bundle
• ldbg::find_all_superbubbles
• ldbg::find_all_superbubbles_old
• ldbg::find_superbubble
• parse::parse_file_names
• parse::parse_loci
• parse::parse_locus
• stage::extract_aligned_bam_reads
• stage::open_bam
• stage::open_fasta
• stage::read_spans_locus
• stage::stage_data
• stage::stage_data_in_memory
• storage_gcs::gcs_download_file
• storage_gcs::gcs_get_file_update_time
• storage_gcs::gcs_list_files
• storage_gcs::gcs_list_files_of_type
• storage_gcs::gcs_split_path
• storage_local::local_get_file_update_time
• utils::basename_without_extension
• utils::canonicalize_kmer
• utils::default_bounded_progress_bar
• utils::default_hidden_progress_bar
• utils::default_unbounded_progress_bar
• utils::gc_content
• utils::homopolymer_compressed
• utils::read_fasta
• utils::read_gfa
• utils::shannon_entropy
• utils::write_gfa
• wmec::phase
• wmec::phase_all