Function stage_data

pub fn stage_data(
    output_path: &PathBuf,
    loci: &LinkedHashSet<(String, u64, u64, String)>,
    seq_urls: &HashSet<Url>,
    unmapped: bool,
    haplotype: Option<u8>,
    cache_path: &PathBuf,
) -> Result<usize>

Public function to stage data from multiple BAM files and write to an output file.

Arguments

• output_path - A reference to a PathBuf representing the output file path.
• loci - A reference to a HashSet of tuples representing the loci to extract.
• seq_urls - A reference to a HashSet of URLs representing the sequence files.
• unmapped - A boolean indicating whether to extract unmapped reads.
• cache_path - A reference to a PathBuf representing the cache directory path.

Returns

The number of records written to the output file.

Errors

This function returns an error if the output file cannot be created.

Panics

If an error occurs while staging data from the files.