Functionsยง
- extract_
aligned_ bam_ reads - open_
bam - Function to open a BAM/CRAM file from a URL and cache its contents locally.
- open_
fasta - Function to open a FASTA file from a URL and cache its contents locally.
- read_
spans_ locus - Checks if a given genomic range spans any of the loci in the provided set.
- stage_
data - Public function to stage data from multiple BAM files and write to an output file.
- stage_
data_ in_ memory