Struct GraphicalGenome

pub struct GraphicalGenome {
    pub anchor: HashMap<String, Value>,
    pub edges: HashMap<String, Value>,
    pub outgoing: HashMap<String, Vec<String>>,
    pub incoming: HashMap<String, Vec<String>>,
}

Fields

anchor: HashMap<String, Value>

edges: HashMap<String, Value>

outgoing: HashMap<String, Vec<String>>

incoming: HashMap<String, Vec<String>>

Implementations

impl GraphicalGenome

pub fn load_graph(filename: &str) -> Result<GraphicalGenome>

Load a graphical genome from a file

Arguments

• filename - A string slice that holds the name of the file to be loaded

Returns

A Result containing the graphical genome if the file was successfully loaded

Errors

• The file cannot be opened (e.g., permission issues, file not found).
• The file format is invalid (e.g., not a valid GZIP file or has unexpected content).

Panics

• The file cannot be opened.
• The file is not a valid GZIP-compressed file.
• The annotation string is not valid JSON.
• There is a memory allocation error or other unexpected issue with the HashMap operations.

pub fn extract_single_sample_graph( &self, df_single_sample: &Array2<f64>, anchorlist: &Vec<String>, readset: &Vec<String>, sample: &str, ) -> Result<GraphicalGenome>

Method to extract a single sample graph

Arguments

• df_single_sample - A 2D array containing the imputed data matrix
• anchorlist - A vector of strings containing the anchor names
• readset - A vector of strings containing the read names
• sample - A string slice containing the sample name

Returns

A Result containing the graphical genome of the single sample

Errors

• The df_single_sample array has an invalid shape.
• The anchor or read indices are invalid.
• There is a memory allocation error.
• The JSON data is invalid.
• There is an unexpected data structure or other internal error.

Panics

If the edge do not have outgoing anchor

Trait Implementations

impl Debug for GraphicalGenome

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.