Index

A | C | D | E | F | G | H | I | J | L | M | N | P | Q | R | S | T | U | V | W

A

C

D

E

F

G

  • get_vds_for_freq() (in module gnomad_qc.v4.annotations.generate_freq)
  • get_vep() (in module gnomad_qc.v4.resources.annotations)
  • get_vrs() (in module gnomad_qc.v4.resources.annotations)
  • gnomad_qc.analyses.compute_pext
  • gnomad_qc.analyses.resources
  • gnomad_qc.v4.annotations.compute_coverage
  • gnomad_qc.v4.annotations.fix_freq_an
  • gnomad_qc.v4.annotations.generate_freq
  • gnomad_qc.v4.annotations.generate_freq_genomes
  • gnomad_qc.v4.annotations.generate_variant_qc_annotations
  • gnomad_qc.v4.annotations.insilico_predictors
  • gnomad_qc.v4.annotations.vep_context_ht
  • gnomad_qc.v4.annotations.vrs_annotation_batch
  • gnomad_qc.v4.assessment.calculate_per_sample_stats
  • gnomad_qc.v4.create_release.create_combined_faf_release_ht
  • gnomad_qc.v4.create_release.create_de_novo_release
  • gnomad_qc.v4.create_release.create_false_dup_liftover
  • gnomad_qc.v4.create_release.create_release_sites_ht
  • gnomad_qc.v4.create_release.create_release_utils
  • gnomad_qc.v4.create_release.make_var_annot_hists
  • gnomad_qc.v4.create_release.validate_and_export_vcf
  • gnomad_qc.v4.resources.annotations
  • gnomad_qc.v4.resources.assessment
  • gnomad_qc.v4.resources.basics
  • gnomad_qc.v4.resources.constants
  • gnomad_qc.v4.resources.meta
  • gnomad_qc.v4.resources.release
  • gnomad_qc.v4.resources.sample_qc
  • gnomad_qc.v4.resources.variant_qc
  • gnomad_qc.v4.sample_qc.assign_ancestry
  • gnomad_qc.v4.sample_qc.create_sample_qc_metadata_ht
  • gnomad_qc.v4.sample_qc.create_sample_qc_metadata_ht_genomes
  • gnomad_qc.v4.sample_qc.generate_qc_mt
  • gnomad_qc.v4.sample_qc.hard_filters
  • gnomad_qc.v4.sample_qc.identify_trios
  • gnomad_qc.v4.sample_qc.interval_qc
  • gnomad_qc.v4.sample_qc.outlier_filtering
  • gnomad_qc.v4.sample_qc.platform_inference
  • gnomad_qc.v4.sample_qc.relatedness
  • gnomad_qc.v4.sample_qc.sex_inference
  • gnomad_qc.v4.subset
  • gnomad_qc.v4.variant_qc.evaluation
  • gnomad_qc.v4.variant_qc.final_filter
  • gnomad_qc.v4.variant_qc.final_filter_genomes
  • gnomad_qc.v4.variant_qc.import_variant_qc_vcf
  • gnomad_qc.v4.variant_qc.random_forest
  • gnomad_qc.v4.variant_qc.vqsr
  • gnomad_qc.v5.configs.validity_inputs_schema
  • gnomad_qc.v5.data_ingestion.create_vds
  • gnomad_qc.v5.data_ingestion.federated_validity_checks
  • gnomad_qc.v5.resources.basics
  • gnomad_qc.v5.resources.constants
  • gnomad_qc.v5.resources.meta
  • gnomad_qc.v5.resources.rwb_utils

H

I

J

L

M

N

P

Q

R

S

T

U

V

W