gnomad_qc.v4.create_release.create_release_utils

Common utils for creating gnomAD v4 exomes and genomes releases.

Module Functions

gnomad_qc.v4.create_release.create_release_utils.remove_missing_vep_fields(...)

Remove fields from VEP 105 annotations that have been excluded in past releases or are missing in all rows.

Common utils for creating gnomAD v4 exomes and genomes releases.

gnomad_qc.v4.create_release.create_release_utils.remove_missing_vep_fields(vep_expr)[source]

Remove fields from VEP 105 annotations that have been excluded in past releases or are missing in all rows.

See https://github.com/broadinstitute/gnomad_production/issues/936 for more information.

Parameters:

vep_expr (StructExpression) – StructExpression containing VEP 105 annotations.

Return type:

StructExpression

Returns:

StructExpression containing VEP 105 annotations with missing fields removed.