gnomad_qc
  • API Reference
    • v4
      • annotations
      • assessment
      • create_release
      • resources
      • sample_qc
      • subset
      • variant_qc
    • v5
    • analyses
  • Change Log
gnomad_qc
  • gnomad_qc
  • gnomad_qc.v4
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gnomad_qc.v4

flowchart LR; sample_qc["<a class="reference internal" href='sample_qc/index.html'>sample_qc</a>"]; annotations["<a class="reference internal" href='annotations/index.html'>annotations</a>"]; variant_qc["<a class="reference internal" href='variant_qc/index.html'>variant_qc</a>"]; create_release["<a class="reference internal" href='create_release/index.html'>create_release</a>"]; sample_qc --> annotations; annotations --> variant_qc; variant_qc --> create_release;
  • annotations
    • compute_coverage
    • fix_freq_an
    • generate_freq
    • generate_freq_genomes
    • generate_variant_qc_annotations
    • insilico_predictors
    • recover_and_complete_vep115
    • vep_context_ht
    • vrs_annotation_batch
  • assessment
    • calculate_per_sample_stats
    • summary_stats
  • create_release
    • create_combined_faf_release_ht
    • create_de_novo_release
    • create_false_dup_liftover
    • create_release_sites_ht
    • create_release_utils
    • make_var_annot_hists
    • validate_and_export_vcf
  • resources
    • annotations
    • assessment
    • basics
    • constants
    • meta
    • release
    • sample_qc
    • variant_qc
  • sample_qc
    • assign_ancestry
    • create_sample_qc_metadata_ht
    • create_sample_qc_metadata_ht_genomes
    • generate_qc_mt
    • hard_filters
    • identify_trios
    • interval_qc
    • outlier_filtering
    • platform_inference
    • relatedness
    • sex_inference
  • subset
    • Named Arguments
    • Module Functions
  • variant_qc
    • evaluation
    • final_filter
    • final_filter_genomes
    • import_variant_qc_vcf
    • random_forest
    • vqsr
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