gnomad_qc.v5.resources.rwb_utils
This module contains utility functions for the Research Workbench.
These functions should live in the ‘util_functions.ipynb.’ notebook. It is included here for version control purposes and cannot be imported via the gnomad_qc module in Researcher Workbench unless the gnomad_qc repo is cloned prior to use.
Module Functions
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Clone the gnomad_qc repository, update the gnomAD package, and restart the kernel. |
This module contains utility functions for the Research Workbench.
These functions should live in the ‘util_functions.ipynb.’ notebook. It is included here for version control purposes and cannot be imported via the gnomad_qc module in Researcher Workbench unless the gnomad_qc repo is cloned prior to use.
- gnomad_qc.v5.resources.rwb_utils.restart_kernel_with_gnomad_packages(qc_branch=None, methods_branch=None, directory='/home/jupyter/packages/')[source]
Clone the gnomad_qc repository, update the gnomAD package, and restart the kernel.
- Parameters:
qc_branch (
Optional[str]) – Branch of the gnomad_qc repository to clone, defaults to None which loads main.methods_branch (
Optional[str]) – Branch of the gnomad_methods repository to clone, defaults to None which loads main.directory – Package directory, defaults to “/home/jupyter/packages/”.
- Return type:
None