gnomad_qc.analyses.resources

Script containing gnomAD analysis resources.

Module Functions

gnomad_qc.analyses.resources.get_pext([...])

Get pext annotation file.

Script containing gnomAD analysis resources.

gnomad_qc.analyses.resources.get_pext(name='base_level', gtex_version='v10', suffix='ht', test=False)[source]

Get pext annotation file.

Parameters:

  • name (str) – Name of the pext annotation file. Default is “base_level”. Must be one of [“annotation_level”, “base_level”, “exomes”, “genomes”, “browser”].

  • gtex_version (str) – GTEx version. Default is “v10”.

  • suffix (str) – Suffix of the pext annotation file. Default is “ht”.

  • test (bool) – Whether to use a tmp path for analysis of the test dataset instead of the full dataset. Default is False.

Return type:

Union[TableResource, str]

Returns:

Pext annotation path or TableResource.