Publications using datasets in Cell Painting Gallery#
This list is not exhuastive but instead we have emphasized publications referencing datasets in the Cell Painting Gallery that were referenced before the datasets received a cpg identifier.
See below for literature searches for specific cpg identifiers.
We welcome contributions to this list either through a pull request or by emailing the corresponding author of our Cell Painting Gallery paper.
First Author |
Title |
Year |
Publication URL |
Dataset Name in Gallery |
|---|---|---|---|---|
Bray |
A dataset of images and morphological profiles of 30 000 small-molecule treatments using the Cell Painting assay |
2017 |
cpg0012-wawer-bioactivecompoundprofiling |
|
Caicedo |
Weakly Supervised Learning of Single-Cell Feature Embeddings |
2018 |
cpg0010-caie-drugresponse |
|
Caicedo |
Cell Painting predicts impact of lung cancer variants |
2022 |
cpg0031-caicedo-cmvip |
|
Caie |
High-Content Phenotypic Profiling of Drug Response Signatures across Distinct Cancer Cells |
2010 |
cpg0010-caie-drugresponse |
|
Chandrasekaran |
Three million images and morphological profiles of cells treated with matched chemical and genetic perturbations |
2022 |
cpg0000-jump-pilot |
|
Chandrasekaran |
JUMP Cell Painting dataset: morphological impact of 136,000 chemical and genetic perturbations |
2023 |
cpg0016-jump |
|
Cimini |
Optimizing the Cell Painting assay for image-based profiling |
2022 |
cpg0001-cellpainting-protocol |
|
Gerry |
Real-Time Biological Annotation of Synthetic Compounds |
2016 |
cpg0005-gerry-bioactivity |
|
Goldsborough |
CytoGAN: Generative Modeling of Cell Images |
2017 |
cpg0010-caie-drugresponse |
|
Gustafsdottir |
Multiplex cytological profiling assay to measure diverse cellular states |
2013 |
cpg0030-gustafsdottir-cellpainting |
|
Haghighi |
High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations |
2022 |
cpg0003-rosetta |
|
Haghighi |
Pseudo-labeling enhanced by privileged information and its application to in situ sequencing images |
2023 |
cpg0021-periscope |
|
Kelley |
High-content microscopy reveals a morphological signature of bortezomib resistance |
2023 |
cpg0028-kelley-resistance |
|
Laber and Strobel |
Discovering cellular programs of intrinsic and extrinsic drivers of metabolic traits using LipocyteProfiler |
2023 |
cpg0011-lipocyteprofiler |
|
Moshkov |
Learning representations for image-based profiling of perturbations |
2022 |
cpg0019-moshkov-deepprofiler |
|
Pawlowski |
Automating Morphological Profiling with Generic Deep Convolutional Networks |
2016 |
cpg0010-caie-drugresponse |
|
Ramezani, Bauman, Singh, and Weisbart |
A genome-wide atlas of human cell morphology |
2023 |
cpg0021-periscope |
|
Rohban |
Capturing single-cell heterogeneity via data fusion improves image-based profiling |
2019 |
cpg0015-heterogeneity |
|
Rohban |
Systematic morphological profiling of human gene and allele function via Cell Painting |
2017 |
cpg0017-rohban-pathways |
|
Tegtmeyer |
High-dimensional pheotyping to define the genetic basis of cellular morphology |
2023 |
cpg0022-cmqtl |
|
Tromans-Coia and Jamali |
Assessing the performance of the Cell Painting assay across different imaging systems |
2023 |
cpg0002-jump-scope |
|
Wawer |
Toward performance-diverse small-molecule libraries for cell-based phenotypic screening using multiplexed high-dimensional profiling |
2014 |
cpg0012-wawer-bioactivecompoundprofiling |
|
Way |
Morphology and gene expression profiling provide complementary information for mapping cell state |
2022 |
cpg0004-lincs |
Click on any of the links below for a Google Scholar search for publications referencing the given dataset.
Dataset name |
|---|