Machine Learning (ML)/Deep Learning (DL)

Contents

Machine Learning (ML)/Deep Learning (DL)#

See Workflows for specific examples of workflows using data on the Cell Painting Gallery including examples using machine learning.

Compressed images#

As machine learning (ML) and deep learning (DL) workflows often benefit from image compression, we provide the following compressed images. We welcome contributions of compressed images for any other datasets in the Cell Painting Gallery.

Dataset	Location	Description
cpg0004-lincs	cpg0019-moshkov-deepprofiler/broad/training_images/LINCS/	single cell .png crops with cell masks
cpg0012-wawer-bioactivecompoundprofiling	cpg0019-moshkov-deepprofiler/broad/training_images/BBBC036/	single cell .png crops with cell masks
cpg0016-jump	cpg0016-jump/SOURCE/workspace/segmentation/cellpose/objects/BATCH/	PLATE.zarr files of single cell crops and nuclei and cell masks. Label image for mapping.
cpg0017-rohban-pathways	cpg0019-moshkov-deepprofiler/broad/training_images/BBBC037/	single cell .png crops with cell masks
cpg0030-gustafsdottir-cellpainting	cpg0019-moshkov-deepprofiler/broad/training_images/BBBC022/	single cell .png crops with cell masks
cpg0031-caicedo-cmvip	cpg0019-moshkov-deepprofiler/broad/training_images/BBBC043/	single cell .png crops with cell masks