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Cell Painting Gallery Documentation

  • Cell Painting Gallery Overview

Data

  • Cell Painting Gallery folder structure
  • Feature Sets
  • Browsing Data on the Cell Painting Gallery
  • Downloading from Cell Painting Gallery

Applications

  • Workflows using the Cell Painting Gallery
  • Machine Learning (ML)/Deep Learning (DL)

Technical Guides

  • Citing the Cell Painting Gallery
  • Contributing
  • Tutorial: Uploading to the Cell Painting Gallery
  • Prefixes
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  • .md

Citing the Cell Painting Gallery

Contents

  • Cell Painting Gallery data licence
  • Citing the CPG
    • Cell Painting Gallery publication
    • Individual dataset publications
    • Example citations

Citing the Cell Painting Gallery#

Cell Painting Gallery data licence#

All the data is released with CC0 1.0 Universal (CC0 1.0).

Though the data is in the public domain, professional ethics requires citation.

Citing the CPG#

When citing data that you have accessed from the Cell Painting Gallery, please cite both our publication announcing the Cell Painting Gallery in Nature Methods (Weisbart et al., 2024) as well as the individual publication/s describing any dataset/s that you have used. Please also acknowledge the Registry of Open Data (RODA) on AWS for their support in hosting the data.

Cell Painting Gallery publication#

Weisbart, E., Kumar, A., Arevalo, J., Carpenter, A. E., Cimini, B. A., & Singh, S. (2024). Cell Painting Gallery: an open resource for image-based profiling. Nature Methods. https://doi.org/10.1038/s41592-024-02399-z
@ARTICLE{Weisbart2024-ta,
  title     = "Cell Painting Gallery: an open resource for image-based profiling",
  author    = "Weisbart, Erin and Kumar, Ankur and Arevalo, John and Carpenter,
               Anne E and Cimini, Beth A and Singh, Shantanu",
  journal   = "Nat. Methods",
  publisher = "Springer Science and Business Media LLC",
  month     = September,
  year      = 2024,
  language  = "en",
  doi       = "https://doi.org/10.1038/s41592-024-02399-z",
}

Individual dataset publications#

Individual publications associated with specific datasets are listed in the “Publication to cite” column in the Cell Painting Gallery repository README and landing page.

Example citations#

We used the dataset cpg0000 (Chandrasekaran et al., 2022), available from the Cell Painting Gallery (Weisbart et al., 2024) on the Registry of Open Data on AWS (https://registry.opendata.aws/cellpainting-gallery/).
# In text
Data was accessed from the Cell Painting Gallery (Weisbart et al., 2024). We analysed datasets cpg0000-jump-pilot (Chandrasekaran et al., 2022) and cpg0001-cellpainting-protocol (Cimini et al., 2022).

# In acknowledgements
We acknowledge the AWS Registry of Open Data (RODA) program for hosting the Cell Painting Gallery data.

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Machine Learning (ML)/Deep Learning (DL)

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Contributing

Contents
  • Cell Painting Gallery data licence
  • Citing the CPG
    • Cell Painting Gallery publication
    • Individual dataset publications
    • Example citations

By Broad Institute

© Copyright 2024.