Package | Description |
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picard.vcf | |
picard.vcf.processor |
Class and Description |
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VariantProcessor.Accumulator
Handles
VariantContext s, and accumulates their data in some fashion internally. |
Class and Description |
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VariantAccumulatorExecutor
Describes the functionality for an executor that manages the delegation of work to
VariantProcessor.Accumulator s. |
VariantIteratorProducer
A mechanism for iterating over
CloseableIterator of VariantContext s in in some fashion, given VCF files and optionally
an interval list. |
VariantProcessor
Describes an object that processes variants and produces a result.
|
VariantProcessor.Accumulator
Handles
VariantContext s, and accumulates their data in some fashion internally. |
VariantProcessor.AccumulatorGenerator
Generates instances of
VariantProcessor.Accumulator s. |
VariantProcessor.Builder
Simple builder of
VariantProcessor s. |
VariantProcessor.ResultMerger
Takes a collection of results produced by
VariantProcessor.Accumulator.result() and merges them into a single RESULT . |
VcfFileSegment
Describes a segment of a particular VCF file.
|
VcfFileSegmentGenerator
Describes a mechanism for producing
VcfFileSegment s from a VCF file. |