Uses of Class
picard.vcf.processor.VariantIteratorProducer

Packages that use VariantIteratorProducer

Package	Description
picard.vcf.processor

Uses of VariantIteratorProducer in picard.vcf.processor

Methods in picard.vcf.processor that return VariantIteratorProducer

Modifier and Type	Method and Description
static VariantIteratorProducer	VariantIteratorProducer.byHundredMegabaseChunks(java.util.List<java.io.File> vcfs) Produces a chunking with segments of size 100 megabases (or less if a contig boundary is reached).
static VariantIteratorProducer	VariantIteratorProducer.byHundredMegabaseChunksWithOnTheFlyFilteringByInterval(java.util.List<java.io.File> vcfs, htsjdk.samtools.util.IntervalList intervalList) Produces a chunking with segments of size 100 megabases (or less if a contig boundary is reached), that also performs on-the-fly filtering of VariantContext

Constructors in picard.vcf.processor with parameters of type VariantIteratorProducer

Constructor and Description
MultiThreadedChunkBased(int numThreads, VariantIteratorProducer vcIteratorProducer, VariantProcessor.AccumulatorGenerator<A,R> accumulatorGenerator)