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Hierarchy For Package picard.vcf
Package Hierarchies:
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Class Hierarchy
java.lang.Object
picard.vcf.
ByIntervalListVariantContextIterator
(implements java.util.Iterator<E>)
picard.vcf.
CallingMetricAccumulator
(implements picard.vcf.processor.
VariantProcessor.Accumulator
<RESULT>)
picard.vcf.
GvcfMetricAccumulator
picard.vcf.
CallingMetricAccumulator.Result
picard.cmdline.
CommandLineProgram
picard.vcf.
CollectVariantCallingMetrics
picard.vcf.
GatherVcfs
picard.vcf.
GenotypeConcordance
picard.vcf.
LiftoverVcf
picard.vcf.
MakeSitesOnlyVcf
picard.vcf.
MergeVcfs
picard.vcf.
RenameSampleInVcf
picard.vcf.
SortVcf
picard.vcf.
SplitVcfs
picard.vcf.
UpdateVcfSequenceDictionary
picard.vcf.
VcfFormatConverter
picard.vcf.
VcfToIntervalList
picard.vcf.
GenotypeConcordanceCounts
picard.vcf.
GenotypeConcordanceScheme
picard.vcf.
GA4GHScheme
picard.vcf.
GA4GHSchemeWithMissingAsHomRef
picard.vcf.
GenotypeConcordanceSchemeFactory
picard.vcf.
GenotypeConcordanceStates
picard.vcf.
GenotypeConcordanceStates.TruthAndCallStates
(implements java.lang.Comparable<T>)
htsjdk.samtools.metrics.MetricBase
picard.vcf.
CollectVariantCallingMetrics.VariantCallingSummaryMetrics
picard.vcf.
CollectVariantCallingMetrics.VariantCallingDetailMetrics
picard.vcf.
GenotypeConcordanceContingencyMetrics
picard.vcf.
GenotypeConcordanceDetailMetrics
picard.vcf.
GenotypeConcordanceSummaryMetrics
picard.vcf.
PairedVariantSubContextIterator
(implements java.util.Iterator<E>)
picard.vcf.
PairedVariantSubContextIterator.VcfTuple
Enum Hierarchy
java.lang.Object
java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
picard.vcf.
GenotypeConcordanceStates.TruthState
picard.vcf.
GenotypeConcordanceStates.ContingencyState
picard.vcf.
GenotypeConcordanceStates.CallState
picard.vcf.
GenotypeConcordanceStateCodes
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