picard.vcf

Enum GenotypeConcordanceStates.ContingencyState

java.lang.Object

java.lang.Enum<GenotypeConcordanceStates.ContingencyState>

picard.vcf.GenotypeConcordanceStates.ContingencyState

All Implemented Interfaces:

java.io.Serializable, java.lang.Comparable<GenotypeConcordanceStates.ContingencyState>

Enclosing class:

GenotypeConcordanceStates

public static enum GenotypeConcordanceStates.ContingencyState
extends java.lang.Enum<GenotypeConcordanceStates.ContingencyState>

A specific state for a 2x2 contingency table. NA denotes an invalid state that should not be reachable by the code. EMPTY denotes that no conclusion could be drawn from the data.

Enum Constant Summary

Enum Constants

Enum Constant and Description
EMPTY
FN
FP
NA
TN
TP

Method Summary

Modifier and Type	Method and Description
static GenotypeConcordanceStates.ContingencyState	valueOf(java.lang.String name) Returns the enum constant of this type with the specified name.
static GenotypeConcordanceStates.ContingencyState[]	values() Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum

clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

getClass, notify, notifyAll, wait, wait, wait

Enum Constant Detail

TP

public static final GenotypeConcordanceStates.ContingencyState TP

FP

public static final GenotypeConcordanceStates.ContingencyState FP

TN

public static final GenotypeConcordanceStates.ContingencyState TN

FN

public static final GenotypeConcordanceStates.ContingencyState FN

NA

public static final GenotypeConcordanceStates.ContingencyState NA

EMPTY

public static final GenotypeConcordanceStates.ContingencyState EMPTY

Method Detail

values

public static GenotypeConcordanceStates.ContingencyState[] values()

Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:

for (GenotypeConcordanceStates.ContingencyState c : GenotypeConcordanceStates.ContingencyState.values())
    System.out.println(c);

Returns:

an array containing the constants of this enum type, in the order they are declared

valueOf

public static GenotypeConcordanceStates.ContingencyState valueOf(java.lang.String name)

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

java.lang.IllegalArgumentException - if this enum type has no constant with the specified name

java.lang.NullPointerException - if the argument is null