GenotypeConcordanceStateCodes (PICARD JDK API Documentation)

java.lang.Object
- java.lang.Enum<GenotypeConcordanceStateCodes>
- - picard.vcf.GenotypeConcordanceStateCodes

All Implemented Interfaces:

java.io.Serializable, java.lang.Comparable<GenotypeConcordanceStateCodes>
```
public enum GenotypeConcordanceStateCodes
extends java.lang.Enum<GenotypeConcordanceStateCodes>
```
Created by kbergin on 7/30/15.

Enum Constant Summary

Enum Constants
Enum Constant and Description
`GT_FILTERED_CODE`
`HET_REF_VAR1_CODE`
`HET_VAR1_VAR2_CODE`
`HOM_REF_CODE`
`HOM_VAR1_CODE`
`INCOMPARABLE_CODE`
`IS_MIXED_CODE`
`LOW_DP_CODE`
`LOW_GQ_CODE`
`MISSING_CODE` These codes allow for constants in the truth state enum and the call state enum to be compared.
`NO_CALL_CODE`
`VC_FILTERED_CODE`

Method Summary

All Methods Static Methods Concrete Methods
Modifier and Type	Method and Description
`static GenotypeConcordanceStateCodes`	`valueOf(java.lang.String name)` Returns the enum constant of this type with the specified name.
`static GenotypeConcordanceStateCodes[]`	`values()` Returns an array containing the constants of this enum type, in the order they are declared.

Methods inherited from class java.lang.Enum
clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object
getClass, notify, notifyAll, wait, wait, wait

- Enum Constant Detail
  - MISSING_CODE
```
public static final GenotypeConcordanceStateCodes MISSING_CODE
```
    These codes allow for constants in the truth state enum and the call state enum to be compared. The final INCOMPARABLE_CODE is for Call States that are not reflected in the Truth State, so they can never match.
  - HOM_REF_CODE
```
public static final GenotypeConcordanceStateCodes HOM_REF_CODE
```
  - HET_REF_VAR1_CODE
```
public static final GenotypeConcordanceStateCodes HET_REF_VAR1_CODE
```
  - HET_VAR1_VAR2_CODE
```
public static final GenotypeConcordanceStateCodes HET_VAR1_VAR2_CODE
```
  - HOM_VAR1_CODE
```
public static final GenotypeConcordanceStateCodes HOM_VAR1_CODE
```
  - NO_CALL_CODE
```
public static final GenotypeConcordanceStateCodes NO_CALL_CODE
```
  - LOW_GQ_CODE
```
public static final GenotypeConcordanceStateCodes LOW_GQ_CODE
```
  - LOW_DP_CODE
```
public static final GenotypeConcordanceStateCodes LOW_DP_CODE
```
  - VC_FILTERED_CODE
```
public static final GenotypeConcordanceStateCodes VC_FILTERED_CODE
```
  - GT_FILTERED_CODE
```
public static final GenotypeConcordanceStateCodes GT_FILTERED_CODE
```
  - IS_MIXED_CODE
```
public static final GenotypeConcordanceStateCodes IS_MIXED_CODE
```
  - INCOMPARABLE_CODE
```
public static final GenotypeConcordanceStateCodes INCOMPARABLE_CODE
```
- Method Detail
  - values
```
public static GenotypeConcordanceStateCodes[] values()
```
    Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:
```
for (GenotypeConcordanceStateCodes c : GenotypeConcordanceStateCodes.values())
    System.out.println(c);
```
    Returns:
    
    an array containing the constants of this enum type, in the order they are declared
  - valueOf
```
public static GenotypeConcordanceStateCodes valueOf(java.lang.String name)
```
    Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)
    
    Parameters:
    
    name - the name of the enum constant to be returned.
    
    Returns:
    
    the enum constant with the specified name
    
    Throws:
    
    java.lang.IllegalArgumentException - if this enum type has no constant with the specified name
    
    java.lang.NullPointerException - if the argument is null

Enum GenotypeConcordanceStateCodes

Enum Constant Summary

Method Summary

Methods inherited from class java.lang.Enum

Methods inherited from class java.lang.Object

Enum Constant Detail

MISSING_CODE

HOM_REF_CODE

HET_REF_VAR1_CODE

HET_VAR1_VAR2_CODE

HOM_VAR1_CODE

NO_CALL_CODE

LOW_GQ_CODE

LOW_DP_CODE

VC_FILTERED_CODE

GT_FILTERED_CODE

IS_MIXED_CODE

INCOMPARABLE_CODE

Method Detail

values

valueOf