Uses of Class
picard.metrics.SAMRecordAndReference

Packages that use SAMRecordAndReference

Package	Description
picard.analysis
picard.metrics

Uses of SAMRecordAndReference in picard.analysis

Methods in picard.analysis that return types with arguments of type SAMRecordAndReference

Modifier and Type	Method and Description
protected PerUnitMetricCollector<AlignmentSummaryMetrics,java.lang.Comparable<?>,SAMRecordAndReference>	AlignmentSummaryMetricsCollector.makeChildCollector(java.lang.String sample, java.lang.String library, java.lang.String readGroup)
protected PerUnitMetricCollector<picard.analysis.RrbsMetrics,java.lang.Comparable<?>,SAMRecordAndReference>	RrbsMetricsCollector.makeChildCollector(java.lang.String sample, java.lang.String library, java.lang.String readGroup)

Uses of SAMRecordAndReference in picard.metrics

Methods in picard.metrics that return SAMRecordAndReference

Modifier and Type	Method and Description
protected SAMRecordAndReference	SAMRecordAndReferenceMultiLevelCollector.makeArg(htsjdk.samtools.SAMRecord samRec, htsjdk.samtools.reference.ReferenceSequence refSeq)