picard.metrics

Class SAMRecordAndReference

java.lang.Object

picard.metrics.SAMRecordAndReference

public class SAMRecordAndReference
extends java.lang.Object

Constructor Summary

Constructors

Constructor and Description
SAMRecordAndReference(htsjdk.samtools.SAMRecord samRec, htsjdk.samtools.reference.ReferenceSequence refSeq)

Method Summary

Modifier and Type	Method and Description
htsjdk.samtools.reference.ReferenceSequence	getReferenceSequence()
htsjdk.samtools.SAMRecord	getSamRecord()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SAMRecordAndReference

public SAMRecordAndReference(htsjdk.samtools.SAMRecord samRec,
                             htsjdk.samtools.reference.ReferenceSequence refSeq)

Method Detail

getSamRecord

public htsjdk.samtools.SAMRecord getSamRecord()

getReferenceSequence

public htsjdk.samtools.reference.ReferenceSequence getReferenceSequence()