Uses of Interface
picard.metrics.PerUnitMetricCollector

Packages that use PerUnitMetricCollector

Package	Description
picard.analysis
picard.analysis.directed
picard.metrics

Uses of PerUnitMetricCollector in picard.analysis

Classes in picard.analysis that implement PerUnitMetricCollector

Modifier and Type	Class and Description
class	GcBiasMetricsCollector.PerUnitGcBiasMetricsCollector

Methods in picard.analysis that return PerUnitMetricCollector

Modifier and Type	Method and Description
protected PerUnitMetricCollector<AlignmentSummaryMetrics,java.lang.Comparable<?>,SAMRecordAndReference>	AlignmentSummaryMetricsCollector.makeChildCollector(java.lang.String sample, java.lang.String library, java.lang.String readGroup)
protected PerUnitMetricCollector<GcBiasMetrics,java.lang.Integer,picard.analysis.GcBiasCollectorArgs>	GcBiasMetricsCollector.makeChildCollector(java.lang.String sample, java.lang.String library, java.lang.String readGroup)
protected PerUnitMetricCollector<picard.analysis.RrbsMetrics,java.lang.Comparable<?>,SAMRecordAndReference>	RrbsMetricsCollector.makeChildCollector(java.lang.String sample, java.lang.String library, java.lang.String readGroup)

Uses of PerUnitMetricCollector in picard.analysis.directed

Classes in picard.analysis.directed that implement PerUnitMetricCollector

Modifier and Type	Class and Description
class	InsertSizeMetricsCollector.PerUnitInsertSizeMetricsCollector A Collector for individual InsertSizeMetrics for a given SAMPLE or SAMPLE/LIBRARY or SAMPLE/LIBRARY/READ_GROUP (depending on aggregation levels)
class	TargetMetricsCollector.PerUnitTargetMetricCollector Collect the Target Metrics for one unit of "accumulation" (i.e.

Methods in picard.analysis.directed that return PerUnitMetricCollector

Modifier and Type	Method and Description
protected PerUnitMetricCollector<METRIC_TYPE,java.lang.Integer,htsjdk.samtools.SAMRecord>	TargetMetricsCollector.makeAllReadCollector()
protected PerUnitMetricCollector<InsertSizeMetrics,java.lang.Integer,picard.analysis.directed.InsertSizeCollectorArgs>	InsertSizeMetricsCollector.makeChildCollector(java.lang.String sample, java.lang.String library, java.lang.String readGroup) Make an InsertSizeCollector with the given arguments
protected PerUnitMetricCollector<RnaSeqMetrics,java.lang.Integer,htsjdk.samtools.SAMRecord>	RnaSeqMetricsCollector.makeChildCollector(java.lang.String sample, java.lang.String library, java.lang.String readGroup)
protected PerUnitMetricCollector<METRIC_TYPE,java.lang.Integer,htsjdk.samtools.SAMRecord>	TargetMetricsCollector.makeChildCollector(java.lang.String sample, java.lang.String library, java.lang.String readGroup)

Uses of PerUnitMetricCollector in picard.metrics

Methods in picard.metrics that return PerUnitMetricCollector

Modifier and Type	Method and Description
PerUnitMetricCollector<METRIC_TYPE,Histogram_KEY,ARGTYPE>	MultiLevelCollector.getAllReadsCollector() Get the PerUnitMetricCollector that collects reads for all levels
protected PerUnitMetricCollector<METRIC_TYPE,Histogram_KEY,ARGTYPE>	MultiLevelCollector.makeAllReadCollector()
protected abstract PerUnitMetricCollector<METRIC_TYPE,Histogram_KEY,ARGTYPE>	MultiLevelCollector.makeChildCollector(java.lang.String sample, java.lang.String library, java.lang.String readGroup) Construct a PerUnitMetricCollector with the given arguments.
protected PerUnitMetricCollector<METRIC_TYPE,Histogram_KEY,ARGTYPE>	MultiLevelCollector.makeLibraryCollector(htsjdk.samtools.SAMReadGroupRecord rg)
protected PerUnitMetricCollector<METRIC_TYPE,Histogram_KEY,ARGTYPE>	MultiLevelCollector.makeReadGroupCollector(htsjdk.samtools.SAMReadGroupRecord rg)
protected PerUnitMetricCollector<METRIC_TYPE,Histogram_KEY,ARGTYPE>	MultiLevelCollector.makeSampleCollector(htsjdk.samtools.SAMReadGroupRecord rg)