Uses of Class
picard.filter.CountingPairedFilter

Packages that use CountingPairedFilter

Package	Description
picard.analysis

Uses of CountingPairedFilter in picard.analysis

Methods in picard.analysis with parameters of type CountingPairedFilter

Modifier and Type	Method and Description
protected void	CollectWgsMetrics.WgsMetricsCollector.addMetricsToFile(htsjdk.samtools.metrics.MetricsFile<CollectWgsMetrics.WgsMetrics,java.lang.Integer> file, CountingFilter dupeFilter, CountingFilter mapqFilter, CountingPairedFilter pairFilter)
void	CollectWgsMetrics.WgsMetricsCollector.addToMetricsFile(htsjdk.samtools.metrics.MetricsFile<CollectWgsMetrics.WgsMetrics,java.lang.Integer> file, boolean includeBQHistogram, CountingFilter dupeFilter, CountingFilter mapqFilter, CountingPairedFilter pairFilter)
void	CollectWgsMetricsWithNonZeroCoverage.WgsMetricsWithNonZeroCoverageCollector.addToMetricsFile(htsjdk.samtools.metrics.MetricsFile<CollectWgsMetrics.WgsMetrics,java.lang.Integer> file, boolean includeBQHistogram, CountingFilter dupeFilter, CountingFilter mapqFilter, CountingPairedFilter pairFilter)
protected CollectWgsMetrics.WgsMetrics	CollectWgsMetrics.WgsMetricsCollector.getMetrics(htsjdk.samtools.util.Histogram<java.lang.Integer> depthHistogram, CountingFilter dupeFilter, CountingFilter mapqFilter, CountingPairedFilter pairFilter)