| Class | Description |
|---|---|
| CountingDuplicateFilter |
Counting filter that discards reads that have been marked as duplicates.
|
| CountingFilter |
A SamRecordFilter that counts the number of bases in the reads which it filters out.
|
| CountingMapQFilter |
Counting filter that discards reads below a configurable mapping quality threshold.
|
| CountingPairedFilter |
Counting filter that discards reads that are unpaired in sequencing and paired reads whose mates are not mapped.
|