picard.filter

Class CountingPairedFilter

java.lang.Object

picard.filter.CountingFilter

picard.filter.CountingPairedFilter

All Implemented Interfaces:

htsjdk.samtools.filter.SamRecordFilter

public class CountingPairedFilter
extends CountingFilter

Counting filter that discards reads that are unpaired in sequencing and paired reads whose mates are not mapped.

Constructor Summary

Constructors

Constructor and Description
CountingPairedFilter()

Method Summary

Modifier and Type	Method and Description
boolean	reallyFilterOut(htsjdk.samtools.SAMRecord record) Return true if we are to filter this record out, false otherwise.

Methods inherited from class picard.filter.CountingFilter

filterOut, filterOut, getFilteredBases, getFilteredRecords

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CountingPairedFilter

public CountingPairedFilter()

Method Detail

reallyFilterOut

public boolean reallyFilterOut(htsjdk.samtools.SAMRecord record)

Description copied from class: CountingFilter

Return true if we are to filter this record out, false otherwise.

Specified by:

reallyFilterOut in class CountingFilter