Package | Description |
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picard.analysis.directed | |
picard.annotation |
Constructor and Description |
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RnaSeqMetricsCollector(java.util.Set<MetricAccumulationLevel> accumulationLevels,
java.util.List<htsjdk.samtools.SAMReadGroupRecord> samRgRecords,
java.lang.Long ribosomalBasesInitialValue,
htsjdk.samtools.util.OverlapDetector<Gene> geneOverlapDetector,
htsjdk.samtools.util.OverlapDetector<htsjdk.samtools.util.Interval> ribosomalSequenceOverlapDetector,
java.util.HashSet<java.lang.Integer> ignoredSequenceIndices,
int minimumLength,
RnaSeqMetricsCollector.StrandSpecificity strandSpecificity,
double rrnaFragmentPercentage,
boolean collectCoverageStatistics) |
Modifier and Type | Method and Description |
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Gene |
Gene.Transcript.getGene() |
Modifier and Type | Method and Description |
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static htsjdk.samtools.util.OverlapDetector<Gene> |
GeneAnnotationReader.loadRefFlat(java.io.File refFlatFile,
htsjdk.samtools.SAMSequenceDictionary sequenceDictionary) |
Modifier and Type | Method and Description |
---|---|
int |
Gene.compareTo(Gene that) |