picard.annotation

Class GeneAnnotationReader

java.lang.Object

picard.annotation.GeneAnnotationReader

public class GeneAnnotationReader
extends java.lang.Object

Load gene annotations into an OverlapDetector of Gene objects. Currently only refFlat format is accepted.

Constructor Summary

Constructors

Constructor and Description
GeneAnnotationReader()

Method Summary

Modifier and Type	Method and Description
static htsjdk.samtools.util.OverlapDetector<Gene>	loadRefFlat(java.io.File refFlatFile, htsjdk.samtools.SAMSequenceDictionary sequenceDictionary)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

GeneAnnotationReader

public GeneAnnotationReader()

Method Detail

loadRefFlat

public static htsjdk.samtools.util.OverlapDetector<Gene> loadRefFlat(java.io.File refFlatFile,
                                                                     htsjdk.samtools.SAMSequenceDictionary sequenceDictionary)