xipher X-inactivation caller

About xipher Installation Metadata preparation Other useful tools Running xipher Understanding the output

Other useful tools

Drop-seq for ReduceGTF and GatherDigitalAlleleCounts.
GATK for VariantsToTable.
Picard for CreateSequenceDictionary (optional).

xipher X-inactivation caller

xipher X-inactivation caller
sburber@broadinstitute.org

xipher is a software package for determining which X chromosome is inactive in single-cell or single-nucleus RNA-seq data.