picard.sam.markduplicates.util

Class AbstractMarkDuplicatesCommandLineProgram.SamHeaderAndIterator

java.lang.Object

picard.sam.markduplicates.util.AbstractMarkDuplicatesCommandLineProgram.SamHeaderAndIterator

Enclosing class:

AbstractMarkDuplicatesCommandLineProgram

public static final class AbstractMarkDuplicatesCommandLineProgram.SamHeaderAndIterator
extends java.lang.Object

Little class used to package up a header and an iterable/iterator.

Field Summary

Fields

Modifier and Type	Field and Description
htsjdk.samtools.SAMFileHeader	header
htsjdk.samtools.util.CloseableIterator<htsjdk.samtools.SAMRecord>	iterator

Constructor Summary

Constructors

Constructor and Description
SamHeaderAndIterator(htsjdk.samtools.SAMFileHeader header, htsjdk.samtools.util.CloseableIterator<htsjdk.samtools.SAMRecord> iterator)

Method Summary

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

header

public final htsjdk.samtools.SAMFileHeader header

iterator

public final htsjdk.samtools.util.CloseableIterator<htsjdk.samtools.SAMRecord> iterator

Constructor Detail

SamHeaderAndIterator

public SamHeaderAndIterator(htsjdk.samtools.SAMFileHeader header,
                            htsjdk.samtools.util.CloseableIterator<htsjdk.samtools.SAMRecord> iterator)