FlareLocalAncestryInference

FlareLocalAncestryInference

Inputs

Required

• output_prefix (String, required)
• plink_map (File, required)
• ref_fasta (File, required)
• ref_fasta_fai (File, required)
• ref_panel (File, required)
• ref_vcf (File, required)
• ref_vcf_index (File, required)
• test_vcf (File, required)

Optional

• flare_model (File?)
• F.runtime_attr_override (RuntimeAttr?)

Defaults

• maf (Float, default=0.01)
• mem_gb (Int, default=64)
• nthreads (Int, default=16)
• run_flare (Boolean, default=true)
• thin_bp (Int, default=20000)
• F.zones (String, default="us-central1-a us-central1-b us-central1-c us-central1-f")

Outputs

• global_anc (File?)
• anc_vcf (File?)
• log (File?)
• model (File?)

Dot Diagram