gnomad.utils.intervals

`gnomad.utils.intervals.sort_intervals`(intervals)	Sort an array of intervals by start contig, then start position, then end contig, then end position.
`gnomad.utils.intervals.union_intervals`(intervals)	Generate a list with the union of all intervals in the input list by merging overlapping intervals.
`gnomad.utils.intervals.interval_length`(interval)	Return the total number of bases in an Interval.

gnomad.utils.intervals.sort_intervals(intervals)[source]

Sort an array of intervals by start contig, then start position, then end contig, then end position.

gnomad.utils.intervals.union_intervals(intervals, is_sorted=False)[source]

Generate a list with the union of all intervals in the input list by merging overlapping intervals.

Parameters:

intervals (List[Interval]) – Intervals to merge
is_sorted (bool) – If set, assumes intervals are already sorted, otherwise will sort.

Returns:

List of merged intervals

gnomad.utils.intervals.interval_length(interval)[source]

Return the total number of bases in an Interval.